| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3574 | 51050 | A | C | 34 | 212.77 | CDS | Transversion | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) |
| Scaffold_3574 | 51240 | C | A | 250 | 9106.77 | CDS | Transversion | 1/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) |
| Scaffold_3574 | 51441 | A | T | 18 | 617.77 | CDS | Transversion | 1/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) |
| Scaffold_3574 | 51595 | C | A | 250 | 1809.77 | CDS | Transversion | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) |
| Scaffold_3574 | 51634 | T | A | 250 | 9235.77 | CDS | Transversion | 1/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) |
| Scaffold_3574 | 51700 | A | C | 248 | 2185.77 | CDS | Transversion | 0/1 | Puromycin-sensitive aminopeptidase (PSA) (EC 3.4.11.14) (Cytosol alanyl aminopeptidase) (AAP-S) |
| Scaffold_3574 | 51786 | A | T | 18 | 211.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3574 | 52254 | G | T | 22 | 472.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3574 | 52306 | T | G | 37 | 799.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3576 | 23825 | T | G | 101 | 212.77 | noncoding | Transversion | 0/1 | ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) |
| Scaffold_3576 | 23889 | A | C | 14 | 495.77 | noncoding | Transversion | 1/1 | ATP synthase subunit a, chloroplastic (ATP synthase F0 sector subunit a) (F-ATPase subunit IV) |
| Scaffold_3581 | 52489 | A | C | 21 | 767.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3584 | 15149 | T | A | 51 | 81.28 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3585 | 46344 | A | C | 36 | 956.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3585 | 46504 | A | C | 42 | 538.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3585 | 46824 | C | A | 51 | 97.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3585 | 46886 | A | C | 153 | 3074.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3585 | 46917 | C | G | 145 | 1249.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3585 | 47027 | A | T | 61 | 603.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3589 | 17378 | C | G | 13 | 247.77 | intron | Transversion | 0/1 | Unannotated |