| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3664 | 14429 | C | G | 10 | 195.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3669 | 7649 | T | G | 14 | 479.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3671 | 9109 | C | A | 108 | 36.74 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3672 | 1966 | T | A | 162 | 36.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3672 | 1967 | T | G | 149 | 36.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 6525 | A | T | 27 | 254.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 6577 | G | C | 38 | 699.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 7181 | C | A | 15 | 217.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 7182 | T | A | 15 | 100.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 7792 | A | T | 29 | 110.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 8922 | G | T | 43 | 157.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 9008 | C | G | 50 | 488.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 9011 | T | A | 48 | 488.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 10347 | G | C | 58 | 62.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 10383 | A | T | 63 | 61.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3673 | 54915 | T | G | 16 | 166.77 | exon | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_3673 | 54917 | A | C | 17 | 166.77 | exon | Transversion | 0/1 | Photosystem I P700 chlorophyll a apoprotein A1 (EC 1.97.1.12) (PSI-A) (PsaA) |
| Scaffold_3674 | 3960 | A | T | 39 | 913.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3674 | 4134 | A | T | 128 | 3789.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3678 | 13832 | C | A | 19 | 418.77 | exon | Transversion | 0/1 | Unannotated |