| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3708 | 22908 | G | T | 24 | 351.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23078 | C | A | 32 | 869.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3708 | 23840 | A | C | 49 | 89.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23866 | T | G | 61 | 230.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3711 | 15678 | A | C | 11 | 36.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3711 | 15679 | G | T | 15 | 36.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3711 | 45346 | A | T | 124 | 1440.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3711 | 45925 | C | A | 118 | 129.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3711 | 46090 | A | T | 250 | 2161.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3711 | 46290 | G | C | 12 | 412.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_3721 | 23032 | G | C | 14 | 432.89 | noncoding | Transversion | 1/1 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3723 | 56401 | G | T | 17 | 364.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3723 | 61938 | G | T | 10 | 324.78 | noncoding | Transversion | 1/1 | DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'') |
| Scaffold_3724 | 68734 | T | A | 112 | 1859.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3724 | 68954 | A | T | 18 | 114.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3724 | 69573 | A | T | 98 | 489.77 | CDS | Transversion | 0/1 | Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2) |
| Scaffold_3724 | 69734 | G | T | 37 | 275.77 | CDS | Transversion | 0/1 | Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2) |
| Scaffold_3725 | 36793 | A | T | 111 | 3179.76 | exon | Transversion | 1/1 | Glycosyltransferase family 92 protein RCOM_0530710 (EC 2.4.1.-) |
| Scaffold_3725 | 37015 | C | G | 250 | 1020.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3725 | 37017 | G | T | 250 | 730.77 | exon | Transversion | 0/1 | Unannotated |