| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3776 | 5063 | C | A | 30 | 708.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3781 | 40881 | A | C | 40 | 1453.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3781 | 40882 | G | T | 53 | 1916.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3786 | 29680 | C | A | 21 | 84.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3787 | 43874 | A | C | 250 | 491.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3787 | 43891 | A | C | 250 | 274.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3787 | 44023 | A | C | 250 | 1555.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3787 | 44024 | G | C | 250 | 315.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3787 | 44036 | A | C | 247 | 1003.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3787 | 44039 | A | C | 248 | 613.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3787 | 44063 | A | C | 250 | 108.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3788 | 45354 | A | C | 144 | 4909.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_3789 | 17026 | C | A | 17 | 548.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_3789 | 22381 | C | A | 12 | 63.77 | intron | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22437 | A | C | 13 | 260.77 | intron | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22459 | G | T | 22 | 49.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22467 | G | C | 28 | 64.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22475 | G | T | 37 | 56.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22540 | G | T | 77 | 41.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3789 | 22629 | G | T | 41 | 173.77 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |