SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_2843 21250 C T 20 604.77 exon Transition 1/1 Pre-mRNA cleavage factor Im 25 kDa subunit 2
Scaffold_88 201414 C T 26 76.77 exon Transition 0/1 Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcriptio... more
Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a)
Scaffold_88 201426 C T 35 91.77 exon Transition 0/1 Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcriptio... more
Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a)
Scaffold_88 201441 A G 52 1179.77 exon Transition 0/1 Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcriptio... more
Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a)
Scaffold_88 201488 A G 76 949.77 exon Transition 0/1 Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcriptio... more
Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a)
Scaffold_88 201555 T C 39 649.77 exon Transition 0/1 Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcriptio... more
Pre-mRNA-processing protein 40A (Mediator of RNA polymerase II transcription subunit 35a)
Scaffold_2681 152818 T C 45 1091.77 CDS Transition 0/1 Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome sub... more
Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (26S proteasome regulatory subunit RPN3) (Nuclear antigen 21D7)
Scaffold_3596 51633 T C 13 431.53 intron Transition 0/1 Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 (EC 1.14.11.-)
Scaffold_77 99962 T C 40 1192.77 CDS Transition 1/1 Probable ADP-ribosylation factor GTPase-activating protein AGD14 (ARF GAP A... more
Probable ADP-ribosylation factor GTPase-activating protein AGD14 (ARF GAP AGD14) (Protein ARF-GAP DOMAIN 14) (AtAGD14) (Protein ZIGA4)
Scaffold_1297 23739 A G 20 521.77 CDS Transition 0/1 Probable aquaporin PIP2-2 (OsPIP2;2) (Plasma membrane intrinsic protein 2-2... more
Probable aquaporin PIP2-2 (OsPIP2;2) (Plasma membrane intrinsic protein 2-2)
Scaffold_1112 16405 A G 20 40.77 intron Transition 0/1 Probable boron transporter 6
Scaffold_2820 23800 T C 10 35.77 CDS Transition 0/1 Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic (EC 3.6.3.3) ... more
Probable cadmium/zinc-transporting ATPase HMA1, chloroplastic (EC 3.6.3.3) (EC 3.6.3.5) (Protein HEAVY METAL ATPASE 1)
Scaffold_47 972897 A G 15 301.77 CDS Transition 0/1 Probable carotenoid cleavage dioxygenase 4, chloroplastic (AtCCD4) (EC 1.14... more
Probable carotenoid cleavage dioxygenase 4, chloroplastic (AtCCD4) (EC 1.14.99.-) (AtNCED4)
Scaffold_3663 21829 A G 144 1532.77 CDS Transition 0/1 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.12) (OsCesA1)
Scaffold_3663 21891 T C 15 163.77 CDS Transition 0/1 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.12) (OsCesA1)
Scaffold_150 678069 T C 28 972.77 CDS Transition 1/1 Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.12) (OsCesA8)
Scaffold_150 678126 C T 39 1429.77 CDS Transition 1/1 Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.12) (OsCesA8)
Scaffold_150 678385 T C 30 85.77 CDS Transition 0/1 Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.12) (OsCesA8)
Scaffold_150 678388 T C 29 46.77 CDS Transition 0/1 Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.12) (OsCesA8)
Scaffold_150 679007 A G 15 46.77 CDS Transition 0/1 Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 8 [UDP-forming] (EC 2.4.1.12) (OsCesA8)