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  3. RGC-1066 SNPs

RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_35 260922 A G 12 424.77 exon Transition 1/1 Protein GIGANTEA
Scaffold_252 70485 A G 37 54.77 CDS Transition 0/1 Protein GIGANTEA
Scaffold_5 1159909 T C 73 2084.77 CDS Transition 1/1 Protein INVOLVED IN DE NOVO 2 (Protein RNA-DIRECTED DNA METHYLATION 12)
Scaffold_998 25546 T C 24 45.77 CDS Transition 0/1 Protein MEI2-like 2 (OML2) (MEI2-like protein 2)
Scaffold_1014 16833 G A 12 276.18 intron Transition 0/1 Protein MICRORCHIDIA 6 (AtMORC6) (EC 3.6.-.-) (Protein CRT1-homolog 6) (CRT... more
Protein MICRORCHIDIA 6 (AtMORC6) (EC 3.6.-.-) (Protein CRT1-homolog 6) (CRT1-h6) (Protein DEFECTIVE IN MERISTEM SILENCING 11)
Scaffold_1014 16929 T C 10 38.77 CDS Transition 0/1 Protein MICRORCHIDIA 6 (AtMORC6) (EC 3.6.-.-) (Protein CRT1-homolog 6) (CRT... more
Protein MICRORCHIDIA 6 (AtMORC6) (EC 3.6.-.-) (Protein CRT1-homolog 6) (CRT1-h6) (Protein DEFECTIVE IN MERISTEM SILENCING 11)
Scaffold_68 687163 C T 13 419.77 exon Transition 1/1 Protein NETWORKED 1D
Scaffold_1274 8363 C T 19 435.77 exon Transition 0/1 Protein phosphatase 1 regulatory subunit INH3 (Protein INHIBITOR-3) (AtINH3... more
Protein phosphatase 1 regulatory subunit INH3 (Protein INHIBITOR-3) (AtINH3)
Scaffold_149 234774 T C 250 8071.77 exon Transition 1/1 Protein RALF-like 33
Scaffold_107 133086 G A 20 560.77 intron Transition 1/1 Protein SPIRRIG (BEACH domain-containing protein A1) (BEACH-domain homolog ... more
Protein SPIRRIG (BEACH domain-containing protein A1) (BEACH-domain homolog A1)
Scaffold_36 1640628 A G 11 35.77 CDS Transition 0/1 Protein SRG1 (AtSRG1) (Protein SENESCENCE-RELATED GENE 1)
Scaffold_17 142411 T C 64 498.77 exon Transition 0/1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) ... more
Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4)
Scaffold_17 142559 T C 66 62.77 exon Transition 0/1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) ... more
Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4)
Scaffold_17 142586 G C,T 86 2544.77 exon Transition 1/2 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) ... more
Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4)
Scaffold_17 142592 C T 81 776.77 exon Transition 0/1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) ... more
Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4)
Scaffold_17 142676 T C 57 43.77 exon Transition 0/1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) ... more
Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4)
Scaffold_17 147366 G A 10 178.77 CDS Transition 0/1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) ... more
Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4)
Scaffold_17 147372 A G 10 85.77 CDS Transition 0/1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) ... more
Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4)
Scaffold_83 27751 T C 33 60.77 exon Transition 0/1 Protein SUPPRESSOR OF MAX2 1 (AtSMXL1)
Scaffold_83 27752 A G 13 46.77 exon Transition 0/1 Protein SUPPRESSOR OF MAX2 1 (AtSMXL1)

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