RGC-1066 SNPs

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Total record count: 10279.

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	SNP Id	Position	Reference Allele	Alternate Allele	DP	Quality	Located At	Type	Genotype	Function
	Scaffold_3622	4696	G	A	19	178.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3622	5266	C	T	23	114.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3622	5267	C	T	23	250.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3622	5268	G	A	23	43.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3622	5299	A	G	29	488.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3686	44886	C	T	10	141.77	noncoding	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3686	44945	C	T	13	98.77	noncoding	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3708	23336	G	A	14	149.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3789	22157	T	C	22	504.77	CDS	Transition	1/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3789	22197	G	A	35	376.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3789	22263	G	A	27	101.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3789	22280	C	T	23	68.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3789	22287	A	G	19	657.77	CDS	Transition	1/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3789	22506	G	A	52	746.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3789	22600	G	A	58	937.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3789	22604	G	A	56	891.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3835	1832	G	A	18	276.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3942	33310	T	C	10	286.78	intron	Transition	1/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3942	33363	C	T	10	91.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3942	33408	G	A	36	56.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
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