RGC-1066 SNPs

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Total record count: 10279.

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	SNP Id	Position	Reference Allele	Alternate Allele	DP	Quality	Located At	Type	Genotype	Function
	Scaffold_3942	33804	C	T	42	683.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_3969	44975	T	C	102	2829.77	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
	Scaffold_12	1687011	T	C	10	69.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_2921	42850	G	A	16	179.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_2921	42872	T	C	21	131.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3185	520	T	C	19	57.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3185	542	A	G	16	118.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3185	748	G	A	12	229.84	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3185	756	G	A	12	228.84	exon	Transition	1/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3894	39930	C	T	17	83.77	noncoding	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3969	46165	T	C	83	30.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3969	46190	A	G	64	1659.84	CDS	Transition	1/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3969	46279	T	C	35	837.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3969	46345	T	C	35	692.78	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_3969	46381	C	T	19	36.77	CDS	Transition	0/1	Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (A... more Retrovirus-related Pol polyprotein from transposon RE2 (Retro element 2) (AtRE2) [Includes: Protease RE2 (EC 3.4.23.-); Reverse transcriptase RE2 (EC 2.7.7.49); Endonuclease RE2]
	Scaffold_143	495746	T	C	16	363.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_143	495752	C	T	16	293.77	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_143	495875	G	A	11	192.88	exon	Transition	0/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_164	297497	C	T	11	235.84	CDS	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
	Scaffold_356	73395	T	C	17	477.77	noncoding	Transition	1/1	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
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