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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_15 2484868 A C 10 33.77 CDS Transversion 0/1 Unannotated
Scaffold_15 2551199 A T 31 503.77 noncoding Transversion 0/1 Unannotated
Scaffold_16 246075 G T 18 616.77 CDS Transversion 1/1 Unannotated
Scaffold_16 544196 G T 23 695.84 noncoding Transversion 1/1 Unannotated
Scaffold_16 614351 T G 17 603.77 noncoding Transversion 1/1 Unannotated
Scaffold_16 814678 T A 10 195.9 CDS Transversion 1/1 Unannotated
Scaffold_16 846329 G T 12 405.77 intron Transversion 1/1 Unannotated
Scaffold_16 852148 A C 10 30.77 intron Transversion 0/1 Unannotated
Scaffold_16 1148547 A C 33 1029.77 exon Transversion 1/1 General transcription and DNA repair factor IIH helicase subunit XPD (TFIIH... more
General transcription and DNA repair factor IIH helicase subunit XPD (TFIIH subunit XPD) (EC 3.6.4.12) (ERCC2 homolog) (RAD3 homolog) (UV hypersensitive protein 6) (AtUVH6) (XPD homolog) (AtXPD)
Scaffold_16 1171363 C G 11 254.8 noncoding Transversion 1/1 Unannotated
Scaffold_16 1339476 C A 11 396.77 intron Transversion 1/1 Unannotated
Scaffold_16 1513807 T A 12 431.77 intron Transversion 1/1 Unannotated
Scaffold_16 1515531 A T 62 1226.77 intron Transversion 0/1 Unannotated
Scaffold_16 1604873 A T 154 3218.75 CDS Transversion 0/1 2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxyleste... more
2-hydroxyisoflavanone dehydratase (EC 3.1.1.1) (EC 4.2.1.105) (Carboxylesterase HIDM)
Scaffold_16 1662038 T A 14 55.77 intron Transversion 0/1 Unannotated
Scaffold_17 14089 T A 26 622.77 exon Transversion 1/1 Putative serine/threonine-protein kinase-like protein CCR3 (EC 2.7.11.1) (P... more
Putative serine/threonine-protein kinase-like protein CCR3 (EC 2.7.11.1) (Protein CRINKLY 4 RELATED 3) (AtCRR3)
Scaffold_17 45847 T A 19 112.77 intron Transversion 0/1 Unannotated
Scaffold_17 45873 A T 12 78.77 intron Transversion 0/1 Unannotated
Scaffold_17 142583 G T 82 1673.77 exon Transversion 0/1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) ... more
Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4)
Scaffold_17 142682 G C 57 161.77 exon Transversion 0/1 Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) ... more
Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4)

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