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  3. RGC-1066 SNPs

RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_59 1079347 T G 250 7856.77 exon Transversion 1/1 Unannotated
Scaffold_59 1161728 C G 20 485.96 intron Transversion 1/1 Unannotated
Scaffold_59 1161772 T A 21 49.77 CDS Transversion 0/1 Unannotated
Scaffold_59 1251547 T A 40 60.77 noncoding Transversion 0/1 Unannotated
Scaffold_59 1295742 G T 16 209.77 intron Transversion 0/1 Unannotated
Scaffold_59 1295900 G C 18 631.77 CDS Transversion 1/1 Unannotated
Scaffold_59 1378740 G T 27 376.77 intron Transversion 0/1 Unannotated
Scaffold_59 1494228 T G 12 315.78 noncoding Transversion 1/1 Unannotated
Scaffold_60 370640 A T 11 135.77 noncoding Transversion 0/1 Unannotated
Scaffold_60 370882 T G 40 697.77 noncoding Transversion 0/1 Unannotated
Scaffold_60 374093 A T 10 215.77 intron Transversion 0/1 Oxygen-evolving enhancer protein 1, chloroplastic (OEE1) (33 kDa subunit of... more
Oxygen-evolving enhancer protein 1, chloroplastic (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (33 kDa thylakoid membrane protein) (OEC 33 kDa subunit)
Scaffold_60 537554 G C 45 71.77 exon Transversion 0/1 U-box domain-containing protein 25 (EC 2.3.2.27) (Plant U-box protein 25) (... more
U-box domain-containing protein 25 (EC 2.3.2.27) (Plant U-box protein 25) (RING-type E3 ubiquitin transferase PUB25)
Scaffold_60 646712 C G 12 298.77 exon Transversion 0/1 Protein indeterminate-domain 9 (ID1-like zinc finger protein 1)
Scaffold_60 647667 T G 51 861.77 CDS Transversion 0/1 Unannotated
Scaffold_60 738148 T G 16 435.77 CDS Transversion 1/1 Unannotated
Scaffold_60 793375 A C 11 39.77 CDS Transversion 0/1 Unannotated
Scaffold_60 847555 A T 10 339.78 CDS Transversion 1/1 Starch synthase 3, chloroplastic/amyloplastic (AtSS3) (EC 2.4.1.21) (Solubl... more
Starch synthase 3, chloroplastic/amyloplastic (AtSS3) (EC 2.4.1.21) (Soluble starch synthase III)
Scaffold_60 1196330 G T 23 777.77 exon Transversion 1/1 Unannotated
Scaffold_60 1302087 T G 17 49.77 exon Transversion 0/1 Unannotated
Scaffold_60 1326588 C A 33 1115.77 CDS Transversion 1/1 Unannotated

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