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  3. RGC-1066 SNPs

RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_181 90606 A T 15 427.53 intron Transversion 0/1 ABC transporter B family member 10 (ABC transporter ABCB.10) (AtABCB10) (Mu... more
ABC transporter B family member 10 (ABC transporter ABCB.10) (AtABCB10) (Multidrug resistance protein 10) (P-glycoprotein 10)
Scaffold_181 116662 T A 14 52.77 intron Transversion 0/1 Unannotated
Scaffold_181 116663 T A 14 43.77 intron Transversion 0/1 Unannotated
Scaffold_181 135358 A C 21 83.77 intron Transversion 0/1 Unannotated
Scaffold_181 423073 C A 12 289.78 exon Transversion 1/1 Unannotated
Scaffold_181 425676 A T 53 1593.77 CDS Transversion 0/1 Calcium-dependent protein kinase 1 (OsCDPK1) (OsCPK1) (EC 2.7.11.1)
Scaffold_181 474411 A C 10 324.78 intron Transversion 1/1 Unannotated
Scaffold_181 474412 G T 10 324.78 intron Transversion 1/1 Unannotated
Scaffold_181 685889 T G 22 68.77 CDS Transversion 0/1 Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein... more
Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1)
Scaffold_181 688613 A T 12 318.28 intron Transversion 0/1 Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein... more
Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1)
Scaffold_181 692591 G T 23 631.94 exon Transversion 1/1 Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein... more
Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1)
Scaffold_181 743880 T A 13 352.78 noncoding Transversion 1/1 Unannotated
Scaffold_182 24852 A T 10 33.77 CDS Transversion 0/1 Unannotated
Scaffold_183 18698 T A 141 5114.77 exon Transversion 1/1 Unannotated
Scaffold_188 16570 A T 172 124.77 noncoding Transversion 0/1 Unannotated
Scaffold_188 17493 A T 23 117.77 noncoding Transversion 0/1 Unannotated
Scaffold_192 33801 C G 15 188.77 intron Transversion 0/1 Unannotated
Scaffold_192 35528 A C 212 3963.77 CDS Transversion 0/1 Unannotated
Scaffold_192 72663 T G 12 147.77 noncoding Transversion 0/1 Unannotated
Scaffold_193 11610 A T 29 31.77 CDS Transversion 0/1 Unannotated

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