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  3. RGC-1066 SNPs

RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_594 21326 T G 11 307.78 exon Transversion 1/1 Unannotated
Scaffold_596 5892 C G 12 389.77 noncoding Transversion 1/1 Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8)
Scaffold_596 5893 T G 10 334.77 noncoding Transversion 1/1 Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8)
Scaffold_609 5358 C A 176 5295.77 noncoding Transversion 1/1 Unannotated
Scaffold_615 2183 T G 27 65.77 CDS Transversion 0/1 Serine/threonine-protein kinase BSK6 (EC 2.7.11.1) (Brassinosteroid-signali... more
Serine/threonine-protein kinase BSK6 (EC 2.7.11.1) (Brassinosteroid-signaling kinase 6)
Scaffold_616 4338 G T 19 390.28 CDS Transversion 0/1 Protein CHROMATIN REMODELING 20 (AtCHR20) (EC 3.6.4.-) (ATP-dependent helic... more
Protein CHROMATIN REMODELING 20 (AtCHR20) (EC 3.6.4.-) (ATP-dependent helicase ATRX) (Transcriptional regulator ATRX) (X-linked helicase II)
Scaffold_620 5901 T A 16 476.77 CDS Transversion 1/1 Serine/threonine-protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) (Type one ... more
Serine/threonine-protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) (Type one protein phosphatase 3)
Scaffold_620 28361 A T 25 574.77 exon Transversion 1/1 Unannotated
Scaffold_620 28558 T A 11 368.77 exon Transversion 1/1 Unannotated
Scaffold_625 13129 A T 50 1292.77 exon Transversion 1/1 CRM-domain containing factor CFM2, chloroplastic (Protein CRM FAMILY MEMBER... more
CRM-domain containing factor CFM2, chloroplastic (Protein CRM FAMILY MEMBER 2) (AtCFM2)
Scaffold_626 8975 G C 18 59.77 noncoding Transversion 0/1 Unannotated
Scaffold_628 11705 C G 27 312.77 noncoding Transversion 0/1 Unannotated
Scaffold_629 26062 C A 24 710.77 noncoding Transversion 1/1 Hydroquinone glucosyltransferase (EC 2.4.1.218) (Arbutin synthase)
Scaffold_632 8352 C G 28 884.77 exon Transversion 1/1 Protein JINGUBANG
Scaffold_634 61359 G C 187 6266.77 noncoding Transversion 1/1 Unannotated
Scaffold_634 61590 T G 30 663.77 noncoding Transversion 1/1 Unannotated
Scaffold_641 28364 T A 11 277.18 exon Transversion 0/1 Unannotated
Scaffold_644 9547 A T 13 39.77 exon Transversion 0/1 Unannotated
Scaffold_644 20934 G T 38 47.77 noncoding Transversion 0/1 Unannotated
Scaffold_647 42508 G C 10 101.77 intron Transversion 0/1 Patatin-like protein 2 (AtPLP2) (EC 3.1.1.-) (Patatin-related phospholipase... more
Patatin-like protein 2 (AtPLP2) (EC 3.1.1.-) (Patatin-related phospholipase A IIalpha) (pPLAIIa) (Phospholipase A IIA) (AtPLAIIA)

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