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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_1943 6056 G C 10 301.78 CDS Transversion 1/1 Unannotated
Scaffold_1943 6472 G T 11 340.78 exon Transversion 1/1 Unannotated
Scaffold_1945 16504 C A 22 728.77 noncoding Transversion 1/1 Unannotated
Scaffold_1952 23470 G T 11 384.77 noncoding Transversion 1/1 Unannotated
Scaffold_1959 6229 A T 10 107.77 noncoding Transversion 0/1 Unannotated
Scaffold_1959 6271 T G 11 396.77 noncoding Transversion 1/1 Unannotated
Scaffold_1975 34981 G T 10 368.77 exon Transversion 1/1 Unannotated
Scaffold_1975 35082 C A 47 1284.77 exon Transversion 1/1 Outer envelope protein 64, mitochondrial (Mitochondrial outer membrane prot... more
Outer envelope protein 64, mitochondrial (Mitochondrial outer membrane protein 64) (mtOM64) (Translocon at the outer membrane of chloroplasts 64-V) (AtTOC64-V)
Scaffold_1977 27964 T A 11 378.77 noncoding Transversion 1/1 Unannotated
Scaffold_1977 27965 T G 11 346.77 noncoding Transversion 1/1 Unannotated
Scaffold_1996 13613 A T 11 387.77 noncoding Transversion 1/1 Unannotated
Scaffold_1996 13747 T A 84 3011.77 noncoding Transversion 1/1 Phosphomethylpyrimidine synthase, chloroplastic (EC 4.1.99.17) (Hydroxymeth... more
Phosphomethylpyrimidine synthase, chloroplastic (EC 4.1.99.17) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Protein PYRIMIDINE REQUIRING) (Thiamine biosynthesis protein ThiC) (Protein THIAMINE C)
Scaffold_1996 13748 A C 72 2602.77 noncoding Transversion 1/1 Phosphomethylpyrimidine synthase, chloroplastic (EC 4.1.99.17) (Hydroxymeth... more
Phosphomethylpyrimidine synthase, chloroplastic (EC 4.1.99.17) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Protein PYRIMIDINE REQUIRING) (Thiamine biosynthesis protein ThiC) (Protein THIAMINE C)
Scaffold_2397 181857 T A 15 100.77 noncoding Transversion 0/1 Unannotated
Scaffold_2398 132572 T A 21 57.77 CDS Transversion 0/1 Unannotated
Scaffold_2398 132816 G C 36 746.77 CDS Transversion 0/1 Unannotated
Scaffold_2398 133960 G C 17 432.77 CDS Transversion 1/1 Unannotated
Scaffold_2399 112374 A C 22 670.77 CDS Transversion 1/1 Unannotated
Scaffold_2400 120048 G T 12 280.84 intron Transversion 0/1 Unannotated
Scaffold_2402 42154 G T 20 599.77 exon Transversion 1/1 Exocyst complex component EXO70H1 (AtExo70h1) (Exocyst subunit Exo70 family... more
Exocyst complex component EXO70H1 (AtExo70h1) (Exocyst subunit Exo70 family protein H1)

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