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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_2690 23194 A T 12 277.8 exon Transversion 1/1 Unannotated
Scaffold_2692 109392 G C 12 234.78 noncoding Transversion 0/1 Unannotated
Scaffold_2693 37554 T G 44 1270.77 CDS Transversion 1/1 Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6)
Scaffold_2693 147556 A C 196 5593.77 exon Transversion 1/1 Probable glucan endo-1,3-beta-glucosidase A6 (EC 3.2.1.39) ((1->3)-beta-glu... more
Probable glucan endo-1,3-beta-glucosidase A6 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta-glucanase) (Anther-specific protein A6) (Beta-1,3-endoglucanase) (Protein MATERNAL EFFECT EMBRYO ARREST 48)
Scaffold_2694 80408 T A 12 278.8 noncoding Transversion 1/1 Unannotated
Scaffold_2694 190362 A T 15 484.77 noncoding Transversion 1/1 Unannotated
Scaffold_2694 190483 G T 88 3071.77 noncoding Transversion 1/1 Unannotated
Scaffold_2695 106800 G T 19 448.77 CDS Transversion 1/1 UDP-glycosyltransferase 73C2 (EC 2.4.1.-)
Scaffold_2695 157200 T G 15 268.77 intron Transversion 0/1 Unannotated
Scaffold_2695 220573 A C 14 398.77 exon Transversion 1/1 Uncharacterized mitochondrial protein AtMg00860 (ORF158)
Scaffold_2696 20844 C A 13 72.77 intron Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_2696 20872 A C 17 181.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (A... more
Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1]
Scaffold_2696 83964 T G 10 61.77 exon Transversion 0/1 Phosphatidylinositol 3-kinase, root isoform (PI3-kinase) (PI3K) (PtdIns-3-k... more
Phosphatidylinositol 3-kinase, root isoform (PI3-kinase) (PI3K) (PtdIns-3-kinase) (EC 2.7.1.137) (SPI3K-5)
Scaffold_2697 232107 G T 148 4318.77 CDS Transversion 1/1 Unannotated
Scaffold_2698 3738 A T 68 2398.77 CDS Transversion 1/1 Unannotated
Scaffold_2698 44776 A C 52 48.77 exon Transversion 0/1 Unannotated
Scaffold_2698 99253 C G 249 6017.77 exon Transversion 0/1 Unannotated
Scaffold_2698 99254 A T 245 8343.77 exon Transversion 1/1 Unannotated
Scaffold_2698 189639 A C 250 238.77 noncoding Transversion 0/1 Unannotated
Scaffold_2698 233548 G T 23 305.77 exon Transversion 0/1 Unannotated

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