RGC-1066 SNPs

	SNP Id	Position	Reference Allele	Alternate Allele	DP	Quality	Located At	Type	Genotype	Function
	Scaffold_3138	21259	T	A	250	4653.77	noncoding	Transversion	0/1	Unannotated
	Scaffold_3138	21260	A	T	250	5421.77	noncoding	Transversion	0/1	Unannotated
	Scaffold_3138	30114	G	C	29	1114.77	exon	Transversion	1/1	Unannotated
	Scaffold_3139	44612	A	C	49	1853.77	noncoding	Transversion	1/1	Unannotated
	Scaffold_3139	44613	C	G	60	2274.77	noncoding	Transversion	1/1	Unannotated
	Scaffold_3139	44615	T	A	125	222.77	noncoding	Transversion	0/1	Unannotated
	Scaffold_3139	44644	A	T	250	199.77	noncoding	Transversion	0/1	Unannotated
	Scaffold_3139	44708	C	G	250	138.77	noncoding	Transversion	0/1	Unannotated
	Scaffold_3140	5422	T	A	12	248.88	intron	Transversion	0/1	Unannotated
	Scaffold_3142	15058	G	T	18	560.94	noncoding	Transversion	1/1	Unannotated
	Scaffold_3144	47787	C	A	11	33.77	CDS	Transversion	0/1	Unannotated
	Scaffold_3147	1807	A	C	16	203.77	noncoding	Transversion	0/1	ATP synthase epsilon chain, chloroplastic (ATP synthase F1 sector epsilon s... more ATP synthase epsilon chain, chloroplastic (ATP synthase F1 sector epsilon subunit) (F-ATPase epsilon subunit)
	Scaffold_3149	13799	A	T	17	234.77	exon	Transversion	0/1	Unannotated
	Scaffold_3149	13816	T	A	15	398.77	exon	Transversion	1/1	Unannotated
	Scaffold_3149	14047	T	A	16	86.77	CDS	Transversion	0/1	Unannotated
	Scaffold_3151	23314	A	C	138	428.77	noncoding	Transversion	0/1	Unannotated
	Scaffold_3155	41732	C	G	28	456.77	noncoding	Transversion	1/1	DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encod... more DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta')
	Scaffold_3155	41911	G	T	41	1357.77	noncoding	Transversion	1/1	Unannotated
	Scaffold_3155	43885	G	T	141	542.77	intron	Transversion	0/1	Unannotated
	Scaffold_3156	19529	A	C	59	2111.77	noncoding	Transversion	1/1	Unannotated
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