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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3243 72820 A T 15 70.77 exon Transversion 0/1 Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTR... more
Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2)
Scaffold_3244 18234 A C 250 605.77 noncoding Transversion 0/1 Unannotated
Scaffold_3244 18305 G T 250 49.77 noncoding Transversion 0/1 Unannotated
Scaffold_3244 18359 T G 32 1125.77 noncoding Transversion 1/1 Unannotated
Scaffold_3244 44562 T G 12 383.77 noncoding Transversion 1/1 Unannotated
Scaffold_3245 33307 A T 250 94.77 noncoding Transversion 0/1 Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q... more
Photosystem II protein D1 (PSII D1 protein) (EC 1.10.3.9) (Photosystem II Q(B) protein)
Scaffold_3245 33528 C G 26 544.77 noncoding Transversion 0/1 Unannotated
Scaffold_3249 43720 G C 30 919.77 noncoding Transversion 1/1 Unannotated
Scaffold_3251 53260 C A 112 153.77 noncoding Transversion 0/1 Unannotated
Scaffold_3252 18871 A C 144 133.77 noncoding Transversion 0/1 Unannotated
Scaffold_3253 26944 A C 39 1313.77 noncoding Transversion 1/1 Unannotated
Scaffold_3253 26945 A C 36 1226.77 noncoding Transversion 1/1 Unannotated
Scaffold_3253 41774 T A 21 176.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3253 41852 A C 19 180.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3253 41887 C A 29 342.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3253 41970 C A 19 223.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3259 15630 C A 13 361.28 CDS Transversion 0/1 7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransf... more
7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransferase) (UDP-glucose glucosyltransferase 2) (GjUGT2) (UDP-glycosyltransferase 85A24)
Scaffold_3259 15961 C A 10 343.78 CDS Transversion 1/1 7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransf... more
7-deoxyloganetin glucosyltransferase (EC 2.4.1.324) (Genipin glucosyltransferase) (UDP-glucose glucosyltransferase 2) (GjUGT2) (UDP-glycosyltransferase 85A24)
Scaffold_3266 21158 T G 15 466.77 exon Transversion 1/1 Pentatricopeptide repeat-containing protein At1g71460, chloroplastic
Scaffold_3269 42506 T A 17 293.77 noncoding Transversion 0/1 Unannotated

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