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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3516 56174 G C 12 264.77 noncoding Transversion 0/1 Unannotated
Scaffold_3516 56200 T A 28 67.77 noncoding Transversion 0/1 Unannotated
Scaffold_3516 57356 C G 41 1104.77 noncoding Transversion 0/1 Unannotated
Scaffold_3516 57410 A C 20 398.77 noncoding Transversion 0/1 Unannotated
Scaffold_3516 57951 G T 13 141.77 noncoding Transversion 0/1 Unannotated
Scaffold_3516 68284 G C 56 1493.77 CDS Transversion 0/1 Unannotated
Scaffold_3516 68344 T A 50 247.77 CDS Transversion 0/1 Unannotated
Scaffold_3517 17685 A T 47 1452.77 exon Transversion 1/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3517 56541 C G 14 429.77 exon Transversion 1/1 Unannotated
Scaffold_3517 56578 C A 15 439.77 exon Transversion 1/1 Unannotated
Scaffold_3521 65228 T A 15 371.77 intron Transversion 1/1 Unannotated
Scaffold_3522 69427 A T 10 350.77 exon Transversion 1/1 Unannotated
Scaffold_3522 69428 G T 10 344.77 exon Transversion 1/1 Unannotated
Scaffold_3522 69493 A T 249 2636.77 exon Transversion 0/1 Unannotated
Scaffold_3523 52472 T A 13 349.77 exon Transversion 0/1 Unannotated
Scaffold_3528 2527 G T 16 247.77 noncoding Transversion 0/1 ABC transporter C family member 8 (ABC transporter ABCC.8) (AtABCC8) (EC 3.... more
ABC transporter C family member 8 (ABC transporter ABCC.8) (AtABCC8) (EC 3.6.3.44) (ATP-energized glutathione S-conjugate pump 6) (Glutathione S-conjugate-transporting ATPase 6) (Multidrug resistance-associated protein 6)
Scaffold_3529 15557 C A 60 1482.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3529 15654 C G 47 866.77 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3529 15677 A C 53 1748.77 exon Transversion 1/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3529 15901 A T 13 375.74 exon Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]

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