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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3651 3506 A C 62 215.77 noncoding Transversion 0/1 Unannotated
Scaffold_3651 3532 T A 64 1393.77 noncoding Transversion 0/1 Unannotated
Scaffold_3651 51983 G C 12 150.77 exon Transversion 0/1 Unannotated
Scaffold_3651 71127 T G 177 39.77 noncoding Transversion 0/1 Unannotated
Scaffold_3652 60367 C A 13 423.77 noncoding Transversion 1/1 Unannotated
Scaffold_3652 63388 A C 52 123.77 noncoding Transversion 0/1 Unannotated
Scaffold_3652 63391 T G 21 366.77 noncoding Transversion 1/1 Unannotated
Scaffold_3654 8544 A C 217 102.77 intron Transversion 0/1 Unannotated
Scaffold_3654 29796 A T 17 547.94 noncoding Transversion 1/1 Unannotated
Scaffold_3654 29797 G T 17 624.77 noncoding Transversion 1/1 Unannotated
Scaffold_3660 15682 A T 241 2672.77 noncoding Transversion 0/1 Unannotated
Scaffold_3660 37700 T G 100 2090.77 noncoding Transversion 1/1 Uncharacterized protein ORF91
Scaffold_3660 38019 G T 18 599.77 noncoding Transversion 1/1 Unannotated
Scaffold_3661 19641 T A 250 5167.77 intron Transversion 1/1 Unannotated
Scaffold_3663 12359 T G 11 81.28 noncoding Transversion 1/1 ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 se... more
ATP synthase subunit alpha, chloroplastic (EC 3.6.3.14) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha)
Scaffold_3663 21447 C A 234 2249.77 exon Transversion 0/1 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.12) (OsCesA1)
Scaffold_3663 21486 C A 159 1412.77 exon Transversion 0/1 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.12) (OsCesA1)
Scaffold_3663 21643 A T 24 376.77 CDS Transversion 0/1 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.12) (OsCesA1)
Scaffold_3663 21888 G C 27 256.77 CDS Transversion 0/1 Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.1... more
Probable cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.12) (OsCesA1)
Scaffold_3663 45391 T A 39 1201.77 noncoding Transversion 1/1 Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein ... more
Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47)

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