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  3. RGC-1066 SNPs

RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3681 15858 A T 14 176.77 CDS Transversion 0/1 Unannotated
Scaffold_3681 16753 G C 17 560.77 CDS Transversion 1/1 Unannotated
Scaffold_3681 16765 A C 27 34.77 CDS Transversion 0/1 Unannotated
Scaffold_3681 16769 C A 26 678.77 CDS Transversion 1/1 Unannotated
Scaffold_3681 19904 G T 14 123.77 exon Transversion 0/1 Unannotated
Scaffold_3683 32489 A C 64 2303.77 exon Transversion 1/1 Unannotated
Scaffold_3683 32490 G T 78 2658.77 exon Transversion 1/1 Unannotated
Scaffold_3691 51698 C A 209 5806.77 CDS Transversion 1/1 Pyruvate kinase isozyme A, chloroplastic (EC 2.7.1.40)
Scaffold_3693 28885 T A 18 40.77 CDS Transversion 0/1 Unannotated
Scaffold_3693 48126 T A 15 67.77 exon Transversion 0/1 Unannotated
Scaffold_3694 4650 T G 11 104.03 noncoding Transversion 1/1 Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein ... more
Photosystem II CP47 reaction center protein (PSII 47 kDa protein) (Protein CP-47)
Scaffold_3695 49987 C G 29 38.77 noncoding Transversion 0/1 Unannotated
Scaffold_3696 54550 T G 20 652.81 noncoding Transversion 1/1 Unannotated
Scaffold_3697 43475 G T 86 446.77 noncoding Transversion 0/1 Unannotated
Scaffold_3697 43476 G C 119 309.77 noncoding Transversion 0/1 Unannotated
Scaffold_3707 10731 T A 163 5945.77 noncoding Transversion 1/1 Unannotated
Scaffold_3707 10732 T G 163 5945.77 noncoding Transversion 1/1 Unannotated
Scaffold_3708 21008 C G 34 601.77 intron Transversion 0/1 Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOG... more
Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) (SoFdGOGAT)
Scaffold_3708 21779 A T 33 826.77 intron Transversion 0/1 Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOG... more
Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT)
Scaffold_3708 22862 A T 13 297.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]

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