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RGC-1066 SNPs

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Total record count: 10279.

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SNP Id Position Reference Allele Alternate Allele DP Quality Located At Type Genotype Function
Scaffold_3708 22908 G T 24 351.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3708 23078 C A 32 869.77 intron Transversion 1/1 Unannotated
Scaffold_3708 23840 A C 49 89.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3708 23866 T G 61 230.77 CDS Transversion 0/1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Prot... more
Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease]
Scaffold_3711 15678 A C 11 36.77 noncoding Transversion 0/1 Unannotated
Scaffold_3711 15679 G T 15 36.77 noncoding Transversion 0/1 Unannotated
Scaffold_3711 45346 A T 124 1440.77 CDS Transversion 0/1 Unannotated
Scaffold_3711 45925 C A 118 129.77 CDS Transversion 0/1 Unannotated
Scaffold_3711 46090 A T 250 2161.77 CDS Transversion 0/1 Unannotated
Scaffold_3711 46290 G C 12 412.77 intron Transversion 1/1 Unannotated
Scaffold_3721 23032 G C 14 432.89 noncoding Transversion 1/1 DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-enco... more
DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'')
Scaffold_3723 56401 G T 17 364.78 CDS Transversion 1/1 Unannotated
Scaffold_3723 61938 G T 10 324.78 noncoding Transversion 1/1 DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-enco... more
DNA-directed RNA polymerase subunit beta'' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta'') (RNA polymerase subunit beta'')
Scaffold_3724 68734 T A 112 1859.77 CDS Transversion 0/1 Unannotated
Scaffold_3724 68954 A T 18 114.77 CDS Transversion 0/1 Unannotated
Scaffold_3724 69573 A T 98 489.77 CDS Transversion 0/1 Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2... more
Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2)
Scaffold_3724 69734 G T 37 275.77 CDS Transversion 0/1 Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2... more
Protein tesmin/TSO1-like CXC 2 (AtTCX2) (Protein TSO1-like 2) (Protein SOL2)
Scaffold_3725 36793 A T 111 3179.76 exon Transversion 1/1 Glycosyltransferase family 92 protein RCOM_0530710 (EC 2.4.1.-)
Scaffold_3725 37015 C G 250 1020.77 exon Transversion 0/1 Unannotated
Scaffold_3725 37017 G T 250 730.77 exon Transversion 0/1 Unannotated

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