| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2 | 111184 | C | A | 18 | 71.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 122719 | C | A | 14 | 339.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 124621 | C | G | 43 | 96.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 131398 | A | C | 250 | 6526.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 220421 | C | A | 120 | 3007.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 224694 | C | G | 11 | 41.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 495120 | T | A | 14 | 56.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 495121 | G | T | 13 | 32.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 517087 | G | T | 25 | 105.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 520482 | C | A | 34 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 847928 | T | A | 29 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 959900 | A | T | 16 | 33.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 1016828 | T | G | 63 | 569.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 1028910 | A | T | 250 | 108.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 1029873 | A | C | 92 | 652.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 1030804 | A | T | 50 | 69.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 1030891 | T | A | 54 | 503.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 1099301 | A | T | 46 | 172.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2 | 1099334 | C | A | 94 | 2552.77 | exon | Transversion | 0/1 | Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 |
| Scaffold_2 | 1099447 | A | T | 164 | 4257.1 | exon | Transversion | 0/1 | LRR receptor-like serine/threonine-protein kinase (EC 2.7.11.1) (LRR receptor-like serine/threonine-protein kinase At4g26540) (Protein RECEPTOR OF RGF1) (Protein RGF1 INSENSITIVE 3) |