| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_181 | 743204 | G | T | 35 | 200.77 | CDS | Transversion | 0/1 | LRR receptor-like serine/threonine-protein kinase EFR (EC 2.7.11.1) (Elongation factor Tu receptor) (EF-Tu receptor) |
| Scaffold_181 | 853513 | C | G | 13 | 48.77 | intron | Transversion | 0/1 | DNA-directed RNA polymerase II subunit 2 (DNA-directed RNA polymerase II 135 kDa polypeptide) (DNA-directed RNA polymerase II subunit RPB2) (RNA polymerase II subunit 2) (RNA polymerase II subunit B2) (EC 2.7.7.6) (Protein EMBRYO DEFECTIVE 1989) |
| Scaffold_191 | 11498 | C | A | 217 | 1201.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_191 | 11503 | C | G | 153 | 130.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_191 | 11959 | C | A | 67 | 506.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_191 | 11990 | G | C | 68 | 686.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_192 | 72663 | T | G | 37 | 481.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_192 | 72667 | T | A | 14 | 52.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_192 | 73454 | A | C | 250 | 81.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_193 | 87463 | C | A | 10 | 143.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_198 | 76663 | A | C | 63 | 512.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_203 | 70332 | T | A | 12 | 50.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_203 | 70333 | C | G | 16 | 216.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_204 | 3335 | T | G | 31 | 112.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_205 | 393 | T | G | 10 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_206 | 1930 | C | G | 38 | 59.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_206 | 46514 | T | A | 12 | 232.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_212 | 12169 | G | C | 20 | 44.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_213 | 3415 | C | A | 250 | 357.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_213 | 3429 | C | G | 250 | 1712.77 | exon | Transversion | 0/1 | Unannotated |