| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_213 | 3431 | G | T | 250 | 1011.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_215 | 14360 | A | T | 14 | 32.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_215 | 79503 | T | A | 10 | 123.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_216 | 2390 | A | C | 10 | 61.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_219 | 83522 | T | A | 11 | 36.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_221 | 16287 | T | G | 71 | 569.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_221 | 16587 | G | C | 19 | 46.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_222 | 29684 | G | T | 15 | 34.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_222 | 61638 | T | G | 13 | 195.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_222 | 61658 | G | C | 18 | 247.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_222 | 62148 | T | G | 19 | 134.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_223 | 23747 | T | A | 20 | 251.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_226 | 56696 | A | T | 44 | 1120.9 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_235 | 69921 | A | C | 30 | 402.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_236 | 32907 | G | T | 17 | 414.77 | CDS | Transversion | 0/1 | Two-component response regulator ORR21 (OsRRB1) |
| Scaffold_237 | 12622 | T | A | 65 | 336.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_237 | 12625 | C | G | 67 | 368.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_239 | 75933 | A | T | 46 | 768.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_239 | 75934 | C | G | 41 | 423.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_241 | 33571 | A | T | 250 | 730.77 | intron | Transversion | 0/1 | Unannotated |