| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_335 | 52703 | G | C | 48 | 486.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_335 | 52814 | T | A | 38 | 174.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_335 | 66851 | T | G | 10 | 154.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_336 | 30924 | A | T | 73 | 219.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_337 | 5383 | A | C | 22 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_337 | 5436 | C | A | 18 | 469.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_338 | 51799 | C | A | 14 | 217.77 | exon | Transversion | 0/1 | Probable zinc metalloprotease EGY2, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2) |
| Scaffold_338 | 51918 | T | G | 18 | 301.77 | intron | Transversion | 0/1 | Probable zinc metalloprotease EGY2, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2) |
| Scaffold_341 | 30426 | A | T | 18 | 274.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_341 | 31515 | T | G | 96 | 89.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_346 | 57358 | T | A | 13 | 138.77 | intron | Transversion | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (EC 2.7.11.1) |
| Scaffold_349 | 6349 | T | A | 18 | 314.77 | CDS | Transversion | 0/1 | Protein TOC75-3, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts 3) (AtTOC75-III) |
| Scaffold_349 | 6368 | T | A | 28 | 86.77 | CDS | Transversion | 0/1 | Protein TOC75-3, chloroplastic (75 kDa translocon at the outer-envelope-membrane of chloroplasts 3) (AtTOC75-III) |
| Scaffold_349 | 36658 | G | C | 73 | 939.77 | exon | Transversion | 0/1 | Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Vacuolar H(+)-pyrophosphatase) |
| Scaffold_349 | 36673 | C | A | 67 | 375.77 | exon | Transversion | 0/1 | Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Vacuolar H(+)-pyrophosphatase) |
| Scaffold_349 | 36709 | G | T | 19 | 97.77 | exon | Transversion | 0/1 | Pyrophosphate-energized vacuolar membrane proton pump (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase) (H(+)-PPase) (Vacuolar H(+)-pyrophosphatase) |
| Scaffold_352 | 58235 | A | T | 11 | 218.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_355 | 15190 | A | C | 22 | 292.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_361 | 36233 | T | G | 10 | 176.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_368 | 5059 | G | C | 31 | 384.77 | intron | Transversion | 0/1 | Unannotated |