| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_496 | 26467 | G | T | 36 | 847.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_501 | 687 | C | A | 18 | 188.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_501 | 53062 | G | C | 53 | 747.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_503 | 59997 | T | G | 10 | 185.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_503 | 60875 | T | A | 14 | 36.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_504 | 59792 | T | A | 28 | 213.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_505 | 40850 | G | T | 121 | 454.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_505 | 40855 | G | C | 124 | 580.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_508 | 72115 | A | C | 10 | 58.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_516 | 48978 | G | T | 10 | 49.77 | intron | Transversion | 0/1 | Acetolactate synthase small subunit 1, chloroplastic (Acetohydroxy-acid synthase small subunit) (AHAS) (ALS) |
| Scaffold_516 | 49321 | G | C | 16 | 344.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_523 | 49363 | A | C | 250 | 3965.77 | CDS | Transversion | 0/1 | Calnexin homolog |
| Scaffold_524 | 31313 | C | A | 12 | 101.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_526 | 6444 | C | G | 250 | 2112.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_526 | 6533 | A | C | 250 | 442.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_529 | 44296 | G | C | 61 | 57.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_529 | 44515 | A | T | 13 | 256.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_537 | 31848 | T | A | 13 | 244.9 | intron | Transversion | 0/1 | Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic (NbCPP1) |
| Scaffold_537 | 47962 | T | G | 50 | 91.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_538 | 23375 | G | T | 15 | 341.28 | noncoding | Transversion | 0/1 | Unannotated |