| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_11 | 1812926 | T | G | 13 | 259.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_11 | 2025280 | T | G | 29 | 703.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_11 | 2107039 | A | T | 32 | 440.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_11 | 2315372 | G | T | 21 | 148.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 356760 | T | A | 104 | 1273.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 356856 | T | A | 159 | 1606.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 356871 | C | G | 191 | 2339.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 357161 | T | A | 143 | 1468.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 357207 | G | T | 180 | 2494.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 358037 | T | G | 59 | 907.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 358074 | T | A | 91 | 855.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 358582 | T | A | 10 | 53.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 359231 | T | G | 39 | 281.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 359248 | G | T | 50 | 314.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 477305 | T | A | 248 | 272.77 | intron | Transversion | 0/1 | Elongation factor G-1, chloroplastic (cEF-G 1) |
| Scaffold_12 | 478709 | T | G | 11 | 50.77 | intron | Transversion | 0/1 | Elongation factor G-1, chloroplastic (cEF-G 1) |
| Scaffold_12 | 479388 | G | T | 47 | 219.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 576623 | G | T | 54 | 147.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 607867 | T | A | 50 | 723.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 722336 | T | G | 100 | 1992.77 | intron | Transversion | 0/1 | Unannotated |