| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_670 | 23491 | C | A | 21 | 50.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_672 | 9161 | G | T | 21 | 149.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_673 | 60402 | A | T | 10 | 270.22 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_673 | 60403 | A | T | 17 | 464.18 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_673 | 60518 | G | T | 29 | 84.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_675 | 48572 | A | C | 250 | 863.77 | exon | Transversion | 0/1 | Class V chitinase (AtChiC) (EC 3.2.1.14) |
| Scaffold_675 | 49406 | G | C | 36 | 730.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_676 | 25627 | T | A | 11 | 101.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_676 | 25632 | A | T | 15 | 48.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_676 | 62492 | A | T | 11 | 112.77 | CDS | Transversion | 0/1 | T-complex protein 1 subunit eta (TCP-1-eta) (CCT-eta) (Chaperonin CCT7) |
| Scaffold_682 | 38120 | T | G | 14 | 248.03 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_684 | 9066 | T | A | 46 | 511.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_684 | 9154 | T | A | 30 | 637.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_685 | 59288 | T | G | 56 | 276.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_686 | 4100 | G | T | 30 | 130.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_690 | 12988 | A | C | 39 | 707.77 | noncoding | Transversion | 0/1 | Expansin-A1 (AtEXPA1) (Alpha-expansin-1) (At-EXP1) (AtEx1) (Ath-ExpAlpha-1.2) |
| Scaffold_690 | 25323 | A | C | 250 | 874.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_690 | 25446 | G | T | 36 | 919.78 | noncoding | Transversion | 0/1 | Ferredoxin--NADP reductase, leaf isozyme, chloroplastic (FNR) (EC 1.18.1.2) |
| Scaffold_690 | 26006 | A | C | 27 | 340.77 | noncoding | Transversion | 0/1 | Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic (EC 1.18.1.2) (Leaf FNR 2) (FNR-2) (Os-LFNR2) |
| Scaffold_690 | 26007 | G | T | 31 | 358.77 | noncoding | Transversion | 0/1 | Ferredoxin--NADP reductase, leaf isozyme 2, chloroplastic (EC 1.18.1.2) (Leaf FNR 2) (FNR-2) (Os-LFNR2) |