| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_863 | 23677 | T | A | 17 | 284.77 | intron | Transversion | 0/1 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) |
| Scaffold_865 | 62120 | C | G | 13 | 151.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_870 | 61760 | T | A | 16 | 263.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_874 | 40851 | G | T | 21 | 226.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_878 | 27312 | T | G | 13 | 98.77 | exon | Transversion | 0/1 | Inactive LRR receptor-like serine/threonine-protein kinase BIR2 (Protein BAK1-INTERACTING RECEPTOR-LIKE KINASE 2) |
| Scaffold_884 | 50984 | C | A | 98 | 148.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_894 | 61701 | G | T | 13 | 132.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_897 | 23666 | C | G | 27 | 574.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_901 | 55070 | C | G | 13 | 97.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_902 | 1753 | T | G | 18 | 498.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_902 | 1825 | C | G | 19 | 47.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_906 | 19950 | G | C | 28 | 185.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_906 | 19951 | T | A | 32 | 311.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_912 | 56807 | T | G | 16 | 178.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_912 | 56810 | T | G | 35 | 861.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_912 | 57683 | C | A | 106 | 285.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_926 | 53095 | A | C | 12 | 73.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_927 | 33155 | C | G | 16 | 206.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_927 | 33221 | A | T | 24 | 57.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_927 | 54646 | G | C | 18 | 207.77 | exon | Transversion | 0/1 | Unannotated |