| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_984 | 23288 | T | G | 11 | 142.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_990 | 6313 | A | C | 237 | 138.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_990 | 6406 | A | C | 250 | 140.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_992 | 53196 | A | C | 10 | 222.56 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_995 | 43164 | T | A | 55 | 43.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_996 | 1879 | G | T | 13 | 218.77 | noncoding | Transversion | 0/1 | Ubiquitin receptor RAD23d (AtRAD23d) (Putative DNA repair protein RAD23-4) (RAD23-like protein 4) (AtRAD23-4) |
| Scaffold_1000 | 48825 | A | T | 12 | 157.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1000 | 49593 | T | A | 13 | 125.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1006 | 19892 | T | A | 12 | 47.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1006 | 25341 | T | A | 23 | 286.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1021 | 23494 | A | T | 132 | 128.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1021 | 23496 | A | T | 161 | 491.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1021 | 23571 | A | T | 250 | 396.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1021 | 23696 | C | A | 47 | 649.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1021 | 23698 | G | T | 44 | 633.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1025 | 41415 | G | C | 16 | 208.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1029 | 50889 | T | A | 17 | 75.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1031 | 42300 | T | A | 71 | 113.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1039 | 4661 | C | A | 24 | 36.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1043 | 32204 | C | A | 11 | 88.77 | noncoding | Transversion | 0/1 | Unannotated |