| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1048 | 7129 | T | A | 14 | 100.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1052 | 50830 | C | A | 13 | 59.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1061 | 4534 | T | G | 14 | 184.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1062 | 7178 | G | T | 22 | 472.77 | intron | Transversion | 0/1 | Amino acid transporter AVT6A (AtAvt6A) |
| Scaffold_1062 | 7180 | A | C | 10 | 89.77 | intron | Transversion | 0/1 | Amino acid transporter AVT6A (AtAvt6A) |
| Scaffold_1071 | 20037 | T | A | 14 | 163.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1071 | 20074 | A | C | 31 | 420.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1072 | 15874 | G | C | 137 | 1174.77 | noncoding | Transversion | 0/1 | Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 (AtGDI) |
| Scaffold_1073 | 47091 | G | T | 32 | 137.77 | noncoding | Transversion | 0/1 | Cytochrome P450 82A4 (EC 1.14.-.-) (Cytochrome P450 CP9) |
| Scaffold_1073 | 47122 | T | A | 54 | 64.77 | noncoding | Transversion | 0/1 | Cytochrome P450 82A4 (EC 1.14.-.-) (Cytochrome P450 CP9) |
| Scaffold_1073 | 47180 | A | C | 66 | 1229.77 | noncoding | Transversion | 0/1 | Cytochrome P450 82A4 (EC 1.14.-.-) (Cytochrome P450 CP9) |
| Scaffold_1077 | 20033 | C | A | 25 | 32.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1077 | 34873 | A | T | 26 | 485.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1078 | 15941 | G | T | 16 | 157.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1078 | 25810 | G | T | 20 | 60.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1078 | 25853 | A | T | 99 | 1495.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1078 | 25932 | G | C | 61 | 1135.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1078 | 25944 | A | C | 37 | 57.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1084 | 55820 | C | G | 22 | 110.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1088 | 34879 | T | A | 16 | 111.77 | CDS | Transversion | 0/1 | Unannotated |