| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1162 | 34378 | T | G | 49 | 771.85 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1168 | 46140 | T | A | 12 | 99.77 | noncoding | Transversion | 0/1 | Kirola (allergen Act d 11) |
| Scaffold_1168 | 46141 | A | T | 14 | 151.77 | noncoding | Transversion | 0/1 | Kirola (allergen Act d 11) |
| Scaffold_1169 | 53953 | A | T | 53 | 658.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1170 | 39968 | A | C | 12 | 104.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1174 | 1558 | T | G | 20 | 292.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1175 | 20805 | T | A | 20 | 182.77 | noncoding | Transversion | 0/1 | Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (DAHP synthase 2) (Phospho-2-keto-3-deoxyheptonate aldolase 2) |
| Scaffold_1175 | 20807 | C | A | 41 | 459.77 | noncoding | Transversion | 0/1 | Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (EC 2.5.1.54) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (DAHP synthase 2) (Phospho-2-keto-3-deoxyheptonate aldolase 2) |
| Scaffold_1178 | 16650 | G | C | 21 | 71.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1180 | 18517 | A | T | 12 | 44.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1180 | 18572 | A | C | 34 | 715.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1180 | 18670 | A | T | 49 | 932.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1180 | 18868 | A | T | 10 | 54.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1180 | 18895 | C | G | 38 | 30.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1180 | 19161 | T | A | 54 | 687.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1180 | 19179 | G | C | 38 | 475.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1186 | 6127 | G | T | 13 | 43.77 | CDS | Transversion | 0/1 | Transcription elongation factor SPT6 homolog (AtSPT6) |
| Scaffold_1188 | 51665 | G | T | 16 | 81.77 | intron | Transversion | 0/1 | Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28 kDa cold-induced protein) |
| Scaffold_1192 | 35848 | G | T | 65 | 161.77 | exon | Transversion | 0/1 | Protein NRT1/ PTR FAMILY 6.2 (AtNPF6.2) (Nitrate transporter 1.4) |
| Scaffold_1200 | 20830 | A | T | 11 | 73.56 | noncoding | Transversion | 0/1 | Unannotated |