| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1399 | 47783 | G | C | 11 | 83.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1412 | 1409 | T | G | 11 | 37.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1413 | 35901 | G | C | 31 | 570.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1415 | 33093 | G | T | 17 | 233.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1417 | 50046 | G | C | 13 | 293.03 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1418 | 17078 | C | G | 26 | 132.77 | exon | Transversion | 0/1 | UDP-glucose flavonoid 3-O-glucosyltransferase 6 (EC 2.4.1.91) (Flavonol 3-O-glucosyltransferase 6) (FaGT6) |
| Scaffold_1420 | 676 | A | C | 12 | 109.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1420 | 1031 | T | A | 61 | 607.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1421 | 1457 | T | A | 12 | 49.77 | noncoding | Transversion | 0/1 | Protein ELF4-LIKE 2 |
| Scaffold_1422 | 1021 | A | C | 69 | 284.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1422 | 1066 | G | C | 43 | 341.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1422 | 1085 | C | A | 37 | 331.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1424 | 33640 | C | A | 14 | 219.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1426 | 16628 | A | T | 20 | 97.77 | intron | Transversion | 0/1 | Serine/threonine-protein kinase STY46 (EC 2.7.11.1) (Serine/threonine/tyrosine-protein kinase 46) |
| Scaffold_1429 | 3777 | C | A | 16 | 107.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1431 | 35601 | A | C | 29 | 58.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1431 | 35930 | G | T | 32 | 434.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1442 | 28036 | T | G | 37 | 696.77 | CDS | Transversion | 0/1 | Probable 6-phosphogluconolactonase 4, chloroplastic (6PGL 4) (EC 3.1.1.31) |
| Scaffold_1449 | 47288 | G | T | 11 | 198.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1456 | 31054 | C | G | 16 | 41.77 | CDS | Transversion | 0/1 | Unannotated |