| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1525 | 16852 | C | A | 17 | 305.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1530 | 27201 | C | G | 28 | 58.77 | exon | Transversion | 0/1 | Serine carboxypeptidase-like 41 (EC 3.4.16.-) |
| Scaffold_1538 | 44892 | C | A | 54 | 1171.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1544 | 14254 | G | C | 20 | 283.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1556 | 33793 | A | C | 40 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1576 | 26490 | T | G | 36 | 639.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1582 | 30948 | A | T | 61 | 100.77 | noncoding | Transversion | 0/1 | UDP-glycosyltransferase 74F2 (EC 2.4.1.-) (AtSGT1) (Salicylic acid glucosyltransferase 1) |
| Scaffold_1582 | 30949 | A | C | 61 | 1485.77 | noncoding | Transversion | 0/1 | UDP-glycosyltransferase 74F2 (EC 2.4.1.-) (AtSGT1) (Salicylic acid glucosyltransferase 1) |
| Scaffold_1583 | 39507 | A | C | 13 | 260.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1587 | 41769 | T | A | 15 | 110.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1587 | 42642 | T | A | 10 | 218.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1602 | 42218 | A | C | 13 | 279.89 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1602 | 42393 | A | T | 14 | 311.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1609 | 26894 | A | T | 10 | 188.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1625 | 31175 | G | C | 10 | 88.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1647 | 2810 | C | A | 18 | 42.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1648 | 43630 | T | A | 21 | 44.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1649 | 32487 | C | A | 100 | 205.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1654 | 40752 | A | T | 112 | 1208.77 | noncoding | Transversion | 0/1 | Expansin-A5 (AtEXPA5) (Alpha-expansin-5) (At-EXP5) (AtEx5) (Ath-ExpAlpha-1.4) |
| Scaffold_1665 | 19751 | T | A | 78 | 71.77 | CDS | Transversion | 0/1 | Unannotated |