| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_12 | 3292311 | A | C | 250 | 61.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3292562 | C | G | 30 | 470.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3292563 | T | G | 24 | 37.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3521777 | C | G | 23 | 443.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3602416 | G | T | 32 | 314.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3602417 | T | G | 26 | 127.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3602418 | A | T | 13 | 259.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3606081 | T | A | 14 | 39.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3652968 | A | T | 20 | 62.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3712694 | A | T | 56 | 1222.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3743327 | G | T | 82 | 579.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3779966 | A | T | 25 | 299.77 | CDS | Transversion | 0/1 | Rop guanine nucleotide exchange factor 1 (AtRopGEF1) (Kinase partner protein-like) (KPP-like) (Rho of plants guanine nucleotide exchange factor 1) |
| Scaffold_12 | 3781706 | T | G | 30 | 411.77 | CDS | Transversion | 0/1 | Rop guanine nucleotide exchange factor 1 (AtRopGEF1) (Kinase partner protein-like) (KPP-like) (Rho of plants guanine nucleotide exchange factor 1) |
| Scaffold_12 | 3867269 | G | C | 221 | 1650.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3883632 | C | G | 97 | 611.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 4014535 | A | C | 12 | 95.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 55932 | C | A | 13 | 49.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 84455 | G | C | 110 | 547.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 102294 | T | A | 39 | 483.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 176182 | T | A | 31 | 107.77 | CDS | Transversion | 0/1 | Unannotated |