| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2405 | 57932 | C | A | 27 | 464.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2405 | 58004 | T | A | 12 | 195.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2405 | 74037 | A | T | 38 | 715.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2406 | 6309 | T | G | 16 | 221.77 | intron | Transversion | 0/1 | V-type proton ATPase subunit a1 (V-ATPase subunit a1) (V-type proton ATPase 95 kDa subunit a isoform 1) (V-ATPase 95 kDa isoform a1) (Vacuolar H(+)-ATPase subunit a isoform 1) (Vacuolar proton pump subunit a1) (Vacuolar proton translocating ATPase 95 kDa |
| Scaffold_2406 | 61038 | T | G | 62 | 402.77 | CDS | Transversion | 0/1 | Coatomer subunit beta'-3 (Beta'-coat protein 3) (Beta'-COP 3) |
| Scaffold_2406 | 132753 | C | A | 22 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2406 | 161589 | C | A | 36 | 962.96 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2407 | 6717 | G | T | 16 | 75.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2407 | 6762 | C | G | 45 | 788.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2407 | 6788 | T | G | 66 | 1562.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2407 | 6914 | C | G | 37 | 706.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2407 | 6946 | C | A | 24 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2407 | 106187 | T | G | 58 | 350.77 | noncoding | Transversion | 0/1 | Calcium-dependent protein kinase 2 (CDPK 2) (EC 2.7.11.1) |
| Scaffold_2407 | 111822 | G | C | 25 | 594.89 | CDS | Transversion | 0/1 | Calcium-dependent protein kinase 2 (CDPK 2) (EC 2.7.11.1) |
| Scaffold_2407 | 112063 | T | A | 22 | 413.77 | CDS | Transversion | 0/1 | Calcium-dependent protein kinase 2 (CDPK 2) (EC 2.7.11.1) |
| Scaffold_2407 | 112143 | G | T | 19 | 140.77 | CDS | Transversion | 0/1 | Calcium-dependent protein kinase 2 (CDPK 2) (EC 2.7.11.1) |
| Scaffold_2408 | 21816 | T | A | 14 | 249.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2408 | 27222 | T | A | 13 | 237.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2408 | 27508 | A | T | 55 | 842.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2408 | 27793 | T | A | 61 | 771.77 | exon | Transversion | 0/1 | Mitogen-activated protein kinase kinase kinase YODA (EC 2.7.11.25) (YODA MAPKK kinase) |