| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2413 | 115971 | G | C | 10 | 49.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2416 | 66195 | C | A | 18 | 282.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2416 | 74110 | C | G | 17 | 192.77 | intron | Transversion | 0/1 | Calmodulin-binding protein 60 B |
| Scaffold_2418 | 44219 | A | T | 21 | 89.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2419 | 60994 | C | A | 11 | 90.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2419 | 60998 | G | T | 17 | 41.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2420 | 51030 | G | T | 11 | 84.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2420 | 51031 | A | T | 10 | 65.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2420 | 162300 | C | A | 33 | 685.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2422 | 19657 | A | C | 17 | 52.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2422 | 63326 | T | G | 71 | 109.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2422 | 105372 | A | T | 21 | 53.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2425 | 33738 | T | G | 19 | 233.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2425 | 70147 | G | T | 10 | 85.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2428 | 140655 | C | G | 14 | 189.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2429 | 10583 | A | C | 33 | 40.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2430 | 13272 | C | G | 35 | 344.77 | CDS | Transversion | 0/1 | Uncharacterized GPI-anchored protein At1g61900 |
| Scaffold_2430 | 41579 | T | G | 38 | 271.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2430 | 41718 | G | C | 209 | 4498.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2430 | 41720 | C | A | 250 | 5516.77 | intron | Transversion | 0/1 | Unannotated |