| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2442 | 107085 | A | T | 31 | 318.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2445 | 9947 | C | G | 28 | 97.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2445 | 10064 | G | T | 24 | 118.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2445 | 10106 | T | G | 42 | 970.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2445 | 10191 | C | A | 47 | 119.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2446 | 23225 | T | G | 19 | 109.77 | intron | Transversion | 0/1 | Cationic amino acid transporter 2, vacuolar |
| Scaffold_2446 | 56686 | T | G | 11 | 103.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2446 | 57043 | C | A | 14 | 327.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2449 | 95329 | T | G | 61 | 64.77 | CDS | Transversion | 0/1 | Phosphatase IMPL1, chloroplastic (EC 3.1.3.25) (Protein MYO-INOSITOL MONOPHOSPHATASE-LIKE 1) |
| Scaffold_2451 | 19453 | A | C | 250 | 836.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2451 | 19777 | A | C | 250 | 410.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2451 | 20155 | A | C | 249 | 279.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2451 | 20320 | A | T | 250 | 162.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2451 | 20721 | C | G | 41 | 300.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2451 | 20810 | G | T | 23 | 259.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2451 | 20811 | C | G | 24 | 145.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2451 | 20906 | T | A | 96 | 1953.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2451 | 21015 | A | T | 29 | 765.78 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2452 | 54231 | G | T | 18 | 361.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2453 | 1828 | A | T | 13 | 65.77 | CDS | Transversion | 0/1 | PAP-specific phosphatase HAL2-like (3'(2'),5'-bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase) (Halotolerance protein) |