| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2454 | 87270 | C | A | 10 | 192.84 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2455 | 19858 | G | T | 35 | 70.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2455 | 77115 | C | G | 31 | 235.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2455 | 78942 | T | A | 44 | 71.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2455 | 88678 | T | A | 12 | 93.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2455 | 90641 | T | A | 15 | 50.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2456 | 44872 | T | A | 209 | 1606.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2457 | 90355 | T | A | 25 | 157.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2458 | 44743 | C | A | 18 | 220.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2458 | 44802 | A | C | 17 | 326.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2458 | 47734 | G | C | 64 | 536.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2458 | 47743 | A | T | 60 | 247.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2458 | 50027 | G | C | 71 | 449.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2458 | 50104 | T | A | 114 | 1589.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2458 | 50167 | G | C | 88 | 459.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2459 | 107335 | C | G | 35 | 194.77 | intron | Transversion | 0/1 | Peroxisomal acyl-coenzyme A oxidase 1 (AOX 1) (EC 1.3.3.6) (Long-chain acyl-CoA oxidase) (AtCX1) |
| Scaffold_2460 | 132762 | A | T | 46 | 62.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2462 | 18550 | A | T | 18 | 398.79 | exon | Transversion | 0/1 | Plant-specific TFIIB-related protein PTF2 (Protein POLLEN-EXPRESSED TRANSCRIPTION FACTOR 2) (TFIIB-related protein PTF2) |
| Scaffold_2463 | 61405 | T | G | 20 | 504.82 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2463 | 61578 | T | A | 22 | 93.77 | exon | Transversion | 0/1 | Unannotated |