| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2463 | 84359 | T | A | 35 | 98.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2463 | 116012 | T | G | 16 | 172.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2463 | 129836 | G | T | 132 | 1039.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2467 | 3621 | T | A | 19 | 212.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2468 | 20446 | T | G | 14 | 122.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2469 | 52373 | T | A | 12 | 102.77 | intron | Transversion | 0/1 | Peptidyl-prolyl cis-trans isomerase CYP20-1 (PPIase CYP20-1) (EC 5.2.1.8) (Cyclophilin of 20 kDa 1) (Rotamase CYP20-1) (Rotamase cyclophilin-7) |
| Scaffold_2469 | 52375 | A | C | 13 | 162.77 | intron | Transversion | 0/1 | Peptidyl-prolyl cis-trans isomerase CYP20-1 (PPIase CYP20-1) (EC 5.2.1.8) (Cyclophilin of 20 kDa 1) (Rotamase CYP20-1) (Rotamase cyclophilin-7) |
| Scaffold_2470 | 28280 | G | C | 12 | 113.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2470 | 28283 | G | T | 18 | 266.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2470 | 28420 | G | C | 24 | 375.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2473 | 96720 | T | A | 66 | 410.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2473 | 120062 | G | T | 14 | 61.77 | CDS | Transversion | 0/1 | Kinesin-like protein KIN-7J |
| Scaffold_2475 | 2608 | C | G | 27 | 252.77 | CDS | Transversion | 0/1 | Protein tesmin/TSO1-like CXC 5 (AtTCX5) |
| Scaffold_2475 | 54336 | C | A | 22 | 270.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2475 | 54338 | T | A | 14 | 44.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2475 | 121944 | A | C | 250 | 384.77 | CDS | Transversion | 0/1 | Elongation factor 1-alpha (EF-1-alpha) |
| Scaffold_2475 | 122073 | T | A | 250 | 461.77 | CDS | Transversion | 0/1 | Elongation factor 1-alpha (EF-1-alpha) |
| Scaffold_2475 | 122076 | T | A | 248 | 6395.77 | CDS | Transversion | 0/1 | Elongation factor 1-alpha (EF-1-alpha) |
| Scaffold_2477 | 121375 | G | T | 53 | 78.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2478 | 103926 | T | A | 12 | 112.77 | intron | Transversion | 0/1 | Unannotated |