| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2478 | 104739 | C | A | 14 | 273.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2479 | 118273 | G | T | 12 | 44.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2480 | 25380 | A | T | 18 | 346.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2480 | 115260 | A | T | 32 | 413.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2481 | 1569 | G | T | 13 | 169.77 | CDS | Transversion | 0/1 | 40S ribosomal protein S3-3 |
| Scaffold_2482 | 26240 | T | G | 32 | 781.79 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2482 | 91788 | A | C | 32 | 179.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2482 | 92727 | G | T | 120 | 3278.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2482 | 126819 | C | G | 21 | 44.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2482 | 126841 | C | G | 11 | 67.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2483 | 41638 | A | C | 51 | 46.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2485 | 50864 | A | C | 32 | 775.77 | noncoding | Transversion | 0/1 | 60S ribosomal protein L18 (Fragment) |
| Scaffold_2485 | 50886 | A | C | 21 | 293.77 | noncoding | Transversion | 0/1 | 60S ribosomal protein L18 (Fragment) |
| Scaffold_2485 | 90318 | C | G | 11 | 229.53 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2485 | 91544 | A | T | 32 | 296.77 | intron | Transversion | 0/1 | Signal recognition particle 54 kDa protein, chloroplastic (54 chloroplast protein) (54CP) (SRP54) (cpSRP54) (FFC) |
| Scaffold_2486 | 52335 | G | T | 30 | 270.77 | intron | Transversion | 0/1 | Mitogen-activated protein kinase 3 (AtMPK3) (MAP kinase 3) (EC 2.7.11.24) |
| Scaffold_2486 | 80788 | C | A | 50 | 43.77 | CDS | Transversion | 0/1 | Serine/arginine-rich splicing factor RS2Z33 (RS-containing zinc finger protein 33) (At-RS2Z33) (At-RSZ33) (AtRSZ33) |
| Scaffold_2486 | 81150 | C | A | 39 | 244.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2487 | 26584 | T | A | 60 | 235.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2487 | 99812 | C | G | 22 | 329.77 | noncoding | Transversion | 0/1 | Unannotated |