| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2489 | 4558 | T | G | 54 | 168.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2490 | 1443 | A | C | 81 | 972.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2490 | 49164 | A | T | 15 | 86.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2490 | 50332 | A | T | 226 | 3274.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2492 | 49714 | A | C | 11 | 138.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2492 | 51179 | A | T | 94 | 65.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2492 | 122622 | T | G | 21 | 184.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2492 | 122623 | A | T | 17 | 87.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2495 | 103311 | A | T | 45 | 411.77 | exon | Transversion | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 103712 | G | C | 49 | 525.77 | exon | Transversion | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104347 | A | C | 44 | 385.77 | exon | Transversion | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104470 | C | G | 23 | 384.77 | exon | Transversion | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104567 | T | G | 42 | 540.77 | exon | Transversion | 0/1 | U-box domain-containing protein 30 (EC 2.3.2.27) (Plant U-box protein 30) (RING-type E3 ubiquitin transferase PUB30) |
| Scaffold_2495 | 104759 | T | G | 52 | 312.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2495 | 104837 | T | G | 50 | 921.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2495 | 104899 | G | T | 43 | 556.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2495 | 104921 | C | G | 43 | 452.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2496 | 11758 | G | T | 181 | 892.77 | CDS | Transversion | 0/1 | Ubiquitin receptor RAD23c (AtRAD23c) (Putative DNA repair protein RAD23-3) (RAD23-like protein 3) (AtRAD23-3) |
| Scaffold_2496 | 11812 | C | A | 32 | 417.77 | CDS | Transversion | 0/1 | Ubiquitin receptor RAD23c (AtRAD23c) (Putative DNA repair protein RAD23-3) (RAD23-like protein 3) (AtRAD23-3) |
| Scaffold_2496 | 88176 | T | G | 10 | 185.77 | exon | Transversion | 0/1 | Unannotated |