| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2498 | 34262 | T | G | 46 | 75.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2498 | 57334 | T | A | 74 | 586.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2498 | 105441 | A | C | 47 | 1156.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2498 | 105442 | A | T | 47 | 1171.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2498 | 105640 | A | T | 33 | 181.77 | exon | Transversion | 0/1 | Transcription termination factor MTERF8, chloroplastic (Mitochondrial transcription termination factor 8) (Protein PLASTID TRANSCRIPTIONALLY ACTIVE 15) |
| Scaffold_2498 | 106187 | G | T | 39 | 937.77 | exon | Transversion | 0/1 | Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) |
| Scaffold_2498 | 106362 | A | T | 63 | 135.77 | exon | Transversion | 0/1 | Transcription termination factor MTERF15, mitochondrial (Mitochondrial transcription termination factor 15) |
| Scaffold_2500 | 88778 | G | C | 12 | 185.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2502 | 83373 | A | T | 11 | 176.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2503 | 112522 | A | T | 17 | 256.78 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2507 | 84485 | A | T | 250 | 1717.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2512 | 62996 | T | G | 205 | 1081.77 | noncoding | Transversion | 0/1 | Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit) |
| Scaffold_2513 | 115863 | A | C | 17 | 446.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2515 | 110793 | A | T | 19 | 92.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2516 | 14811 | C | G | 69 | 264.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2517 | 91177 | T | G | 206 | 102.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2519 | 106393 | C | A | 40 | 141.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2520 | 97272 | G | C | 23 | 70.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2521 | 111370 | G | C | 10 | 261.31 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2521 | 114015 | T | A | 19 | 199.77 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |