| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2521 | 114091 | C | A | 14 | 58.77 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2521 | 114280 | T | A | 20 | 244.77 | exon | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_2522 | 21230 | C | G | 11 | 228.9 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2523 | 14110 | A | C | 55 | 344.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2523 | 44246 | C | A | 15 | 99.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2525 | 43896 | G | T | 117 | 631.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2526 | 110494 | T | G | 30 | 50.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2526 | 111842 | G | C | 94 | 323.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2529 | 45635 | T | G | 50 | 62.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2530 | 71800 | C | A | 25 | 503.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2530 | 71804 | G | T | 25 | 468.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2530 | 71974 | C | A | 29 | 663.18 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2532 | 90106 | T | A | 29 | 205.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2532 | 90230 | T | A | 82 | 737.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2535 | 106374 | T | A | 97 | 743.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2535 | 107429 | T | A | 165 | 1239.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2535 | 107552 | C | G | 250 | 1572.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2535 | 111069 | A | C | 16 | 358.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2538 | 3808 | C | G | 18 | 397.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2539 | 3721 | G | C | 10 | 57.77 | noncoding | Transversion | 0/1 | Unannotated |