| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2540 | 61439 | T | A | 10 | 153.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2543 | 35114 | A | C | 14 | 259.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2543 | 35115 | G | T | 27 | 511.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2543 | 35925 | T | G | 107 | 1947.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2544 | 50359 | G | C | 50 | 1010.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2546 | 6588 | A | T | 14 | 105.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2546 | 6589 | A | T | 15 | 123.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2549 | 4759 | T | A | 31 | 161.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2549 | 36662 | C | A | 77 | 82.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2551 | 30522 | C | G | 17 | 188.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2551 | 30531 | G | C | 18 | 190.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2555 | 9117 | C | A | 20 | 87.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2555 | 28474 | T | A | 41 | 446.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2556 | 91613 | A | T | 14 | 105.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2556 | 91614 | C | G | 13 | 51.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2558 | 49107 | A | T | 20 | 196.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2559 | 31053 | T | G | 40 | 195.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2559 | 31089 | G | T | 83 | 631.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2560 | 38055 | T | A | 111 | 67.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2560 | 92900 | G | C | 14 | 178.77 | CDS | Transversion | 0/1 | 12-oxophytodienoate reductase 2 (EC 1.3.1.42) (12-oxophytodienoate-10,11-reductase 2) (AtOPR2) (OPDA-reductase 2) |