| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2618 | 8012 | G | T | 37 | 456.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2618 | 8013 | T | G | 25 | 193.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2618 | 18749 | G | T | 13 | 69.77 | CDS | Transversion | 0/1 | WRKY transcription factor 68 (WRKY DNA-binding protein 68) |
| Scaffold_2622 | 95513 | A | C | 12 | 163.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2627 | 56448 | G | T | 15 | 138.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2632 | 44474 | C | G | 40 | 172.77 | CDS | Transversion | 0/1 | Transmembrane 9 superfamily member 10 (Endomembrane protein 3) (Transmembrane nine protein 10) (AtTMN10) |
| Scaffold_2632 | 86710 | G | C | 154 | 589.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2633 | 40788 | C | A | 19 | 320.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 607 | T | A | 13 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 693 | C | A | 23 | 64.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 7456 | A | C | 14 | 160.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 7458 | C | A | 17 | 282.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 7581 | A | T | 50 | 1168.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 7582 | C | A | 42 | 902.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 31423 | A | T | 69 | 1015.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 31441 | A | T | 60 | 846.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 31719 | T | G | 14 | 112.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 31739 | G | C | 12 | 60.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2637 | 60494 | C | G | 26 | 135.77 | CDS | Transversion | 0/1 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |
| Scaffold_2637 | 60497 | C | G | 26 | 131.77 | CDS | Transversion | 0/1 | Cellulose synthase-like protein H1 (EC 2.4.1.-) (OsCslH1) |