| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2669 | 40488 | G | T | 227 | 240.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2670 | 76138 | A | T | 13 | 369.89 | exon | Transversion | 0/1 | Adenylyl-sulfate kinase 1, chloroplastic (EC 2.7.1.25) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase 1) (Adenosine-5'-phosphosulfate kinase 1) (APS kinase 1) |
| Scaffold_2676 | 61820 | A | C | 15 | 97.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2676 | 61821 | A | C | 15 | 161.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2676 | 61859 | T | G | 119 | 671.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2677 | 4670 | C | A | 27 | 409.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2677 | 6971 | G | T | 12 | 118.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2677 | 19046 | T | A | 29 | 276.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2677 | 20251 | A | T | 16 | 269.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2677 | 122588 | T | G | 35 | 248.77 | intron | Transversion | 0/1 | Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic (ADP-Glc pyrophosphorylase small subunit-like) (ADP-glucose pyrophosphorylase small subunit 2) (ApS2) |
| Scaffold_2677 | 122590 | A | C | 23 | 69.77 | intron | Transversion | 0/1 | Inactive glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic (ADP-Glc pyrophosphorylase small subunit-like) (ADP-glucose pyrophosphorylase small subunit 2) (ApS2) |
| Scaffold_2677 | 124270 | A | T | 73 | 1157.77 | intron | Transversion | 0/1 | Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) |
| Scaffold_2677 | 124577 | C | G | 30 | 218.77 | intron | Transversion | 0/1 | Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) |
| Scaffold_2677 | 124705 | A | T | 79 | 78.77 | intron | Transversion | 0/1 | Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) |
| Scaffold_2677 | 124860 | T | G | 57 | 805.77 | intron | Transversion | 0/1 | Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) |
| Scaffold_2677 | 124861 | C | A | 75 | 1265.77 | intron | Transversion | 0/1 | Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic (EC 2.7.7.27) (ADP-glucose pyrophosphorylase) (ADP-glucose synthase) (AGPase B) (Alpha-D-glucose-1-phosphate adenyl transferase) |
| Scaffold_2677 | 159939 | C | G | 15 | 47.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2677 | 161531 | G | T | 12 | 105.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2677 | 171976 | A | T | 56 | 285.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2678 | 150669 | T | G | 24 | 340.77 | CDS | Transversion | 0/1 | Unannotated |