| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2812 | 68054 | A | T | 10 | 152.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2815 | 5495 | G | T | 76 | 1668.77 | intron | Transversion | 0/1 | Probable inactive dual specificity protein phosphatase-like At4g18593 |
| Scaffold_2815 | 5523 | T | G | 65 | 1409.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 23373 | T | G | 15 | 192.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 23398 | T | A | 12 | 194.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 24011 | A | C | 16 | 41.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 24139 | G | C | 21 | 422.78 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 25030 | A | T | 23 | 199.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 25375 | T | A | 33 | 47.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 25554 | G | T | 34 | 611.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 25604 | A | T | 19 | 255.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 25760 | A | T | 12 | 77.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 25860 | T | G | 42 | 287.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 26149 | G | C | 43 | 229.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 26879 | C | A | 18 | 360.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 27319 | C | G | 61 | 1303.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2831 | 27347 | T | A | 52 | 1341.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2845 | 13513 | G | T | 23 | 545.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2845 | 13557 | T | G | 42 | 499.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2845 | 13713 | G | T | 14 | 35.77 | CDS | Transversion | 0/1 | Unannotated |