| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2905 | 29169 | A | C | 17 | 142.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_2907 | 28640 | A | T | 132 | 1059.77 | intron | Transversion | 0/1 | Chlorophyll a-b binding protein, chloroplastic (LHCII type I CAB) (LHCP) |
| Scaffold_2907 | 28642 | A | T | 250 | 5300.77 | intron | Transversion | 0/1 | Chlorophyll a-b binding protein, chloroplastic (LHCII type I CAB) (LHCP) |
| Scaffold_2912 | 11013 | T | A | 14 | 42.77 | intron | Transversion | 0/1 | DExH-box ATP-dependent RNA helicase DExH5, mitochondrial (EC 3.6.4.13) |
| Scaffold_2913 | 53043 | A | C | 13 | 115.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2916 | 3907 | G | T | 52 | 1269.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2916 | 4008 | G | T | 12 | 113.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2916 | 13984 | C | A | 15 | 156.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2916 | 14101 | A | T | 16 | 298.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2923 | 30518 | C | A | 47 | 64.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2933 | 2499 | A | C | 89 | 1737.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2933 | 2610 | C | G | 64 | 150.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2936 | 8446 | G | C | 16 | 353.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2936 | 9570 | T | G | 16 | 261.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_2936 | 12121 | T | A | 13 | 314.78 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_2936 | 56224 | G | T | 23 | 187.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2936 | 56328 | T | G | 21 | 71.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2936 | 56382 | C | A | 22 | 80.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_2944 | 27957 | T | G | 11 | 257.22 | exon | Transversion | 0/1 | Glucan endo-1,3-beta-glucosidase 9 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 9) ((1->3)-beta-glucanase 9) (Beta-1,3-endoglucanase 9) (Beta-1,3-glucanase 9) |
| Scaffold_2947 | 41957 | C | A | 43 | 295.53 | noncoding | Transversion | 0/1 | Unannotated |