| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3039 | 55185 | T | G | 128 | 3465.77 | CDS | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55203 | A | T | 123 | 61.77 | CDS | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55752 | T | G | 18 | 110.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3039 | 56788 | T | A | 60 | 461.77 | CDS | Transversion | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3040 | 25827 | T | G | 56 | 695.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3040 | 26744 | T | A | 11 | 203.77 | CDS | Transversion | 0/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |
| Scaffold_3040 | 26762 | C | G | 16 | 360.77 | CDS | Transversion | 0/1 | Exportin-2 (Exp2) (Cellular apoptosis susceptibility protein homolog) (Importin-alpha re-exporter) |
| Scaffold_3040 | 78038 | A | T | 37 | 618.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3040 | 78270 | T | A | 31 | 226.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3040 | 78916 | T | G | 250 | 743.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3040 | 79085 | A | T | 249 | 6092.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3040 | 79141 | A | T | 133 | 385.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3041 | 31568 | A | C | 17 | 328.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3045 | 1070 | A | C | 23 | 417.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3045 | 1578 | G | C | 95 | 603.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3051 | 5321 | A | C | 28 | 31.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3056 | 13359 | C | A | 33 | 95.77 | exon | Transversion | 0/1 | Potassium channel AKT1 |
| Scaffold_3056 | 13451 | T | A | 69 | 845.77 | exon | Transversion | 0/1 | Potassium channel AKT1 |
| Scaffold_3056 | 13488 | T | A | 25 | 248.77 | exon | Transversion | 0/1 | Potassium channel AKT1 |
| Scaffold_3056 | 13505 | C | G | 20 | 262.77 | exon | Transversion | 0/1 | Potassium channel AKT1 |