| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3060 | 44103 | T | A | 40 | 278.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3061 | 33751 | A | T | 250 | 248.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54042 | A | T | 38 | 265.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54085 | G | T | 53 | 82.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54154 | A | T | 77 | 605.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54238 | A | T | 28 | 319.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54506 | C | A | 16 | 443.85 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54517 | C | G | 14 | 267.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54554 | A | T | 15 | 272.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 54909 | A | C | 20 | 434.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 55220 | C | G | 250 | 900.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 55393 | A | C | 216 | 3532.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 55455 | A | T | 250 | 100.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3064 | 55656 | A | C | 94 | 991.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3065 | 44753 | A | C | 14 | 207.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3070 | 36062 | T | A | 11 | 141.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3074 | 72482 | T | G | 122 | 647.77 | CDS | Transversion | 0/1 | Probable protein phosphatase 2C 46 (AtPP2C46) (EC 3.1.3.16) |
| Scaffold_3076 | 69114 | T | G | 63 | 291.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_3076 | 69370 | G | T | 63 | 524.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_3078 | 94175 | T | A | 13 | 296.77 | noncoding | Transversion | 0/1 | Unannotated |